Paper Examples

All DNA origami nanostructures reverse engineered in our paper are listed below. For each origami is listed the REVNANO sequence input file, the REVNANO reverse engineered contact map and the reconstructed guide schematic. Entries followed by (D) indicate that single unhybridised bases have been removed from the scaffold strand in order to permit display as a guide schematic.

You can try these examples in REVNANO yourself. See Table 1 of our paper for the REVNANO parameters (MU_MIN, SIGMA and BETA) used in each case.

Raster Origamis

	Origami	REVNANO Input	REVNANO Output
1	RNA/DNA Hybrid Triangle	Sequence File	Contact Map	Guide Schematic
2	M1.3 Four Finger	Sequence File	Contact Map	Guide Schematic
3	Brick	Sequence File	Contact Map	Guide Schematic
4	Mini Triangle	Sequence File	Contact Map	Guide Schematic
5	DeBruijn Sequence Square	Sequence File	Contact Map	Guide Schematic
6	puc19 Rectangle	Sequence File	Contact Map	Guide Schematic
7	6 Helix Bundle	Sequence File	Contact Map (D)	Guide Schematic (D)
8	Fivewell Plate	Sequence File	Contact Map	Guide Schematic
9	Membrane Nanopore	Sequence File	Contact Map (D)	Guide Schematic (D)
10	Single Staple Loop	Sequence File	Contact Map	Guide Schematic
11	DNA Frame	Sequence File	Contact Map	Guide Schematic
12	Rothemund Rectangle	Sequence File	Contact Map	Guide Schematic
13	Rectangle Variant	Sequence File	Contact Map	Guide Schematic
14	Small Moon	Sequence File	Contact Map (D)	Guide Schematic (D)
15	Rothemund Smiley	Sequence File	Contact Map (D)	Guide Schematic (D)
16	Rothemund Star	Sequence File	Contact Map	Guide Schematic
17	Capsule	Sequence File	–	–

Wireframe Origamis

Note: From ATHENA (except for Origami 33 from vHelix website).

	Origami	REVNANO Input	REVNANO Output
18	Triangle	Sequence File	Contact Map (D)	Guide Schematic (D)
19	Square	Sequence File	Contact Map (D)	Guide Schematic (D)
20	Pentagon	Sequence File	Contact Map	Guide Schematic
21	Tetrahedron	Sequence File	Contact Map	Guide Schematic
22	Triangle Mesh	Sequence File	Contact Map (D)	Guide Schematic (D)
23	Cube	Sequence File	Contact Map	Guide Schematic
24	Star Mesh	Sequence File	Contact Map (D)	Guide Schematic (D)
25	Dodecahedron	Sequence File	Contact Map	Guide Schematic
26	Icosahedron	Sequence File	Contact Map (D)	Guide Schematic (D)
27	Square Mesh 1	Sequence File	Contact Map (D)	Guide Schematic (D)
28	Hexagon Mesh 1	Sequence File	Contact Map (D)	Guide Schematic (D)
29	Annulus Mesh 1	Sequence File	Contact Map (D)	Guide Schematic (D)
30	Hexagonal Tile	Sequence File	Contact Map (D)	Guide Schematic (D)
31	Truncated Cube	Sequence File	Contact Map	Guide Schematic
32	Cross Mesh	Sequence File	Contact Map (D)	Guide Schematic (D)
33	vHelix Ball	Sequence File	Contact Map	Guide Schematic
34	Annulus Mesh 2	Sequence File	Contact Map	Guide Schematic
35	Lotus Mesh	Sequence File	Contact Map (D)	Guide Schematic (D)
36	Enneagonal Trapezohedron	Sequence File	–	–